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For hg38
BigWig
Peak-call (q < 1E-05)
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For hg19
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: STAT1
wikigenes
PDBj
CellType: FaDu
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1597601
GSM2069649: DMSO-STAT1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
STAT1
Cell type
Cell type Class
Others
Cell type
FaDu
Primary Tissue
Nasal Pharynx
Site of Extraction
Nasal Pharynx
Tissue Diagnosis
Carcinoma Squamous Cell
Attributes by original data submitter
Sample
source_name
FaDu Cells
cell line
HNSCC cell line FaDu
treatment
DMSO
chip antibody
STAT1 (Santa Cruz sc-345)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-IT® ChIP-Seq Kit (Active Motif) was used for chromatin preparation and ChIP using antibodies for STAT1 (Santa Cruz sc-345) or STAT3 (Santa Cruz sc-482). ChIP-IT® ChIP-Seq Kit (Active Motif) was used for library construction.
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
36616849
Reads aligned (%)
94.1
Duplicates removed (%)
5.9
Number of peaks
6493 (qval < 1E-05)
hg19
Number of total reads
36616849
Reads aligned (%)
93.2
Duplicates removed (%)
6.9
Number of peaks
6340 (qval < 1E-05)
Base call quality data from
DBCLS SRA